Index of /public/paper/GenoSTAN

This folder contains GenoSTAN chromatin state annotations for 127 cell types and tissues (genome version hg20/hg38 (GRCh38)) from Zacher et al. (2016). Chromatin state annotations are available for GenoSTAN-Poilog and GenoSTAN-nb as bed files or GRanges objects objects (for compatibility with Bioconductor). Signal (whole genome) and training data (ENCODE pilot regions [except dataset1]) are available as R data files. External data used for benchmarking of the segmentations are also available for download as Granges objects.

The summarized annotation (GenoSTAN-Poilog) for promoters and enhancers is available in files GenoSTAN_enhancers.bed/GenoSTAN_enhancers.rda and GenoSTAN_promoters.bed/GenoSTAN_promoters.rda.

Cell types and tissuesare labeled using the Epigenome ID (EID) from the Roadmap Epigenomics project. A mapping of EID to a description of the cell type, tissue and sample type can be found in

To download all files type: wget -rc

[ICO]NameLast modifiedSizeDescription

[PARENTDIR]Parent Directory  -  
[DIR]chromatin_state_annotations/2016-02-22 13:17 -  
[DIR]external_data/2023-03-29 10:50 -  
[DIR]signal_files/2016-06-30 10:30 -  
[DIR]training_data/2016-06-30 10:37 -  
[   ]EID_annotation.tab2016-02-22 11:05 8.5K 
[   ]GenoSTAN_enhancers.bed.gz2016-02-22 11:07 18M 
[   ]GenoSTAN_enhancers.rda2016-02-22 11:07 12M 
[   ]GenoSTAN_promoters.bed.gz2016-02-22 11:53 12M 
[   ]GenoSTAN_promoters.rda2016-02-22 11:53 7.6M 
[   ]README2016-06-30 10:44 937  

Apache/2.4.29 (Ubuntu) Server at Port 443