Cell type/tissue group Cell type/tissue group color Sample type Sample type color EID Epigenome name IMR90 e51d25 Cell line 85b3d7 E017 IMR90 fetal lung fibroblasts ES cell 8f3862 Primary cultures 90d9c0 E002 ES-WA7 cells ES cell 8f3862 Primary cultures 90d9c0 E008 H9 cells ES cell 8f3862 Primary cultures 90d9c0 E001 ES-I3 cells ES cell 8f3862 Primary cultures 90d9c0 E015 HUES6 cells ES cell 8f3862 Primary cultures 90d9c0 E014 HUES48 cells ES cell 8f3862 Primary cultures 90d9c0 E016 HUES64 cells ES cell 8f3862 Primary cultures 90d9c0 E003 H1 cells ES cell 8f3862 Primary cultures 90d9c0 E024 ES-UCSF4 cells iPSC 62568d Primary cultures 90d9c0 E020 iPS-20b cells iPSC 62568d Primary cultures 90d9c0 E019 iPS-18 cells iPSC 62568d Primary cultures 90d9c0 E018 iPS-15b cells iPSC 62568d Primary cultures 90d9c0 E021 iPS DF 6.9 cells iPSC 62568d Primary cultures 90d9c0 E022 iPS DF 19.11 cells ES-derived 4775b4 ES cell derived c1b6de E007 H1 derived neuronal progenitor cultured cells ES-derived 4775b4 ES cell derived c1b6de E009 H9 derived neuronal progenitor cultured cells ES-derived 4775b4 ES cell derived c1b6de E010 H9 derived neuron cultured cells ES-derived 4775b4 ES cell derived c1b6de E013 HUES64 derived CD56+ mesoderm ES-derived 4775b4 ES cell derived c1b6de E012 HUES64 derived CD56+ ectoderm ES-derived 4775b4 ES cell derived c1b6de E011 HUES64 derived CD184+ endoderm ES-derived 4775b4 ES cell derived c1b6de E004 H1 BMP4 derived mesendoderm ES-derived 4775b4 ES cell derived c1b6de E005 H1 BMP4 derived trophoblast ES-derived 4775b4 ES cell derived c1b6de E006 H1 derived mesenchymal stem cells Blood & T cell 4ea849 Primary cells faf9a3 E062 Primary mononuclear cells (from PB) Blood & T cell 4ea849 Primary cells faf9a3 E034 Primary T cells from primary blood (from PB) Blood & T cell 4ea849 Primary cells faf9a3 E045 Primary T cells effector/memory enriched (PB) Blood & T cell 4ea849 Primary cells faf9a3 E033 Primary T cells from cord blood Blood & T cell 4ea849 Primary cells faf9a3 E044 Primary T regulatory cells (from PB) Blood & T cell 4ea849 Primary cells faf9a3 E043 Primary T helper cells (from PB) Blood & T cell 4ea849 Primary cells faf9a3 E039 Primary T helper naive cells (from PB) Blood & T cell 4ea849 Primary cells faf9a3 E041 Primary T helper cells PMA-I stimulated Blood & T cell 4ea849 Primary cells faf9a3 E042 Primary T helper 17 cells PMA-I stimulated Blood & T cell 4ea849 Primary cells faf9a3 E040 Primary T helper memory cells (from PB) Blood & T cell 4ea849 Primary cells faf9a3 E037 Primary T helper memory cells (from PB) Blood & T cell 4ea849 Primary cells faf9a3 E048 Primary T CD8+ memory cells (from PB) Blood & T cell 4ea849 Primary cells faf9a3 E038 Primary T helper naive cells (from PB) Blood & T cell 4ea849 Primary cells faf9a3 E047 Primary T CD8+ naive cells (from PB) HSC & B cell 5f8d60 Primary cells faf9a3 E029 Primary monocytes (from PB) HSC & B cell 5f8d60 Primary cells faf9a3 E031 Primary B cells from cord blood HSC & B cell 5f8d60 Primary cells faf9a3 E035 Primary haematopoietic stem cells (HSCs) HSC & B cell 5f8d60 Primary cells faf9a3 E051 Primary HSCs G-CSF-mobilized male HSC & B cell 5f8d60 Primary cells faf9a3 E050 Primary HSCs G-CSF-mobilized female HSC & B cell 5f8d60 Primary cells faf9a3 E036 Primary HSCs short term culture HSC & B cell 5f8d60 Primary cells faf9a3 E032 Primary B cells (from PB) HSC & B cell 5f8d60 Primary cells faf9a3 E046 Primary natural killer cells (from PB) HSC & B cell 5f8d60 Primary cells faf9a3 E030 Primary neutrophils (from PB) Mesenchyme b54671 Primary cultures 90d9c0 E026 Bone marrow derived MSCs Mesenchyme b54671 Primary cultures 90d9c0 E049 Mesenchymal stem cell deriv. chondrocyte Mesenchyme b54671 Primary cultures 90d9c0 E025 Adipose-derived mesenchymal stem cells Mesenchyme b54671 Primary cultures 90d9c0 E023 Mesenchymal stem cell derived adipocyte Myostatin e6621c Primary cultures 90d9c0 E052 Muscle satellite Epithelial f79110 Primary cultures 90d9c0 E055 Foreskin fibroblast Epithelial f79110 Primary cultures 90d9c0 E056 Foreskin fibroblast Epithelial f79110 Primary cultures 90d9c0 E059 Foreskin melanocyte Epithelial f79110 Primary cultures 90d9c0 E061 Foreskin melanocyte Epithelial f79110 Primary cultures 90d9c0 E057 Foreskin keratinocyte Epithelial f79110 Primary cultures 90d9c0 E058 Foreskin keratinocyte Epithelial f79110 Primary cultures 90d9c0 E028 Breast vHMEC mammary epithelial Epithelial f79110 Primary cells faf9a3 E027 Breast myoepithelial Neurosphere f1dd3a Primary cultures 90d9c0 E054 Ganglion eminence derived neurospheres Thymus dbe931 Primary Tissue f36568 E053 Cortex derived neurospheres Brain c08c1b Primary Tissue f36568 E112 Thymus Brain c08c1b Primary Tissue f36568 E093 Fetal thymus Brain c08c1b Primary Tissue f36568 E071 Brain hippocampus middle Brain c08c1b Primary Tissue f36568 E074 Brain substantia nigra Brain c08c1b Primary Tissue f36568 E068 Brain anterior caudate Brain c08c1b Primary Tissue f36568 E069 Brain cingulate gyrus Brain c08c1b Primary Tissue f36568 E072 Brain inferior temporal lobe Brain c08c1b Primary Tissue f36568 E067 Brain angular gyrus Brain c08c1b Primary Tissue f36568 E073 Brain dorsolateral prefrontal cortex Brain c08c1b Primary Tissue f36568 E070 Brain germinal matrix Brain c08c1b Primary Tissue f36568 E082 Fetal brain female Brain c08c1b Primary Tissue f36568 E081 Fetal brain male Adipose ad4c31 Primary Tissue f36568 E063 Adipose nuclei Muscle c25155 Primary Tissue f36568 E100 Psoas muscle Muscle c25155 Primary Tissue f36568 E108 Skeletal muscle female Muscle c25155 Primary Tissue f36568 E107 Skeletal muscle male Muscle c25155 Primary Tissue f36568 E089 Fetal muscle trunk Muscle c25155 Primary Tissue f36568 E090 Fetal muscle leg Heart d5557c Primary Tissue f36568 E083 Fetal heart Heart d5557c Primary Tissue f36568 E104 Right atrium Heart d5557c Primary Tissue f36568 E095 Left ventricle Heart d5557c Primary Tissue f36568 E105 Right ventricle Heart d5557c Primary Tissue f36568 E065 Aorta Smooth Muscle ea42aa Primary Tissue f36568 E078 Duodenum smooth muscle Smooth Muscle ea42aa Primary Tissue f36568 E076 Colon smooth muscle Smooth Muscle ea42aa Primary Tissue f36568 E103 Rectal smooth muscle Smooth Muscle ea42aa Primary Tissue f36568 E111 Stomach smooth muscle Digestive c47cac Primary Tissue f36568 E092 Fetal stomach Digestive c47cac Primary Tissue f36568 E085 Fetal intestine small Digestive c47cac Primary Tissue f36568 E084 Fetal intestine large Digestive c47cac Primary Tissue f36568 E109 Small intestine Digestive c47cac Primary Tissue f36568 E106 Sigmoid colon Digestive c47cac Primary Tissue f36568 E075 Colonic mucosa Digestive c47cac Primary Tissue f36568 E101 Rectal mucosa donor 29 Digestive c47cac Primary Tissue f36568 E102 Rectal mucosa donor 31 Digestive c47cac Primary Tissue f36568 E110 Stomach mucosa Digestive c47cac Primary Tissue f36568 E077 Duodenum mucosa Digestive c47cac Primary Tissue f36568 E079 Oesophagus Digestive c47cac Primary Tissue f36568 E094 Gastric Other aba9aa Primary Tissue f36568 E099 Placenta amnion Other aba9aa Primary Tissue f36568 E086 Fetal kidney Other aba9aa Primary Tissue f36568 E088 Fetal lung Other aba9aa Primary Tissue f36568 E097 Ovary Other aba9aa Primary Tissue f36568 E087 Pancreatic islets Other aba9aa Primary Tissue f36568 E080 Fetal adrenal gland Other aba9aa Primary Tissue f36568 E091 Placenta Other aba9aa Primary Tissue f36568 E066 Liver Other aba9aa Primary Tissue f36568 E098 Pancreas Other aba9aa Primary Tissue f36568 E096 Lung Other aba9aa Primary Tissue f36568 E113 Spleen ENCODE 2012 231f20 Cell line 85b3d7 E114 A549 EtOH 0.02pct lung carcinoma ENCODE 2012 231f20 Cell line 85b3d7 E115 Dnd41 T cell leukaemia ENCODE 2012 231f20 Primary cultures 90d9c0 E116 GM12878 lymphoblastoid ENCODE 2012 231f20 Cell line 85b3d7 E117 HeLa-S3 cervical carcinoma ENCODE 2012 231f20 Cell line 85b3d7 E118 HepG2 hepatocellular carcinoma ENCODE 2012 231f20 Primary cultures 90d9c0 E119 HMEC mammary epithelial ENCODE 2012 231f20 Primary cultures 90d9c0 E120 HSMM skeletal muscle myoblasts ENCODE 2012 231f20 Primary cultures 90d9c0 E121 HSMM-derived skeletal muscle myotubes ENCODE 2012 231f20 Primary cultures 90d9c0 E122 HUVEC umbilical vein endothelial ENCODE 2012 231f20 Primary cultures 90d9c0 E123 K562 leukaemia ENCODE 2012 231f20 Primary cells faf9a3 E124 Monocytes-CD14+ RO01746 ENCODE 2012 231f20 Primary cultures 90d9c0 E125 NH-A astrocyte ENCODE 2012 231f20 Primary cultures 90d9c0 E126 NHDF-ad adult dermal fibroblast ENCODE 2012 231f20 Primary cultures 90d9c0 E127 NHEK-epidermal keratinocyte ENCODE 2012 231f20 Primary cultures 90d9c0 E128 NHLF lung fibroblast ENCODE 2012 231f20 Primary cultures 90d9c0 E129 Osteoblast